H. pylori test (stool antigen, breath test, biopsy)

A breath test, stool antigen test or biopsy shows whether the stomach bacterium H. pylori is there now. A blood antibody test cannot. The test does not look at the stomach lining or diagnose cancer.

Last updated October 2026 · New Dawn Health editorial team

Sample
Breath, stool or a stomach biopsy, depending on the test
Finds a current infection
Breath, stool antigen or biopsy test; not a blood antibody test
Medicines
Acid reducers, antibiotics and bismuth can cause a false negative
After treatment
Retest at least four weeks later
Best use
Ulcers, indigestion, a family history of stomach cancer, long-term NSAIDs

What is an H. pylori test?

Helicobacter pylori, or H. pylori, is a bacterium that lives in the mucus lining the stomach. The infection usually causes no illness by itself. Over years, the inflammation it causes can lead to ulcers and, in some people, stomach cancer.

An H. pylori test answers one question: is the bacterium in your stomach now? Four kinds of test are in use, and they do not answer that question equally well:

The four H. pylori tests, what each needs, and what each can tell you.
Test What you do Finds a current infection? Can confirm a cure?
Urea breath test Breathe into a container, swallow a dose of urea, then give a second breath sample Yes Yes, at least four weeks after treatment
Stool antigen test Collect a small stool sample in a clean container Yes Yes, at least four weeks after treatment
Biopsy during a gastroscopy (rapid urease test or histology) Small tissue samples are taken during an upper endoscopy, a camera exam of the stomach Yes, and the pathologist also sees the lining Yes, when a gastroscopy is needed for another reason
Blood antibody test (serology) One blood draw No: it cannot tell a past infection from a current one No: antibodies can stay positive for decades after a cure

The 2018 Houston Consensus, a US expert panel, recommends that serology "not be utilized for detection of active H pylori infection". For a biopsy, it asks for two samples each from two parts of the stomach, because the bacteria are not spread evenly.

What it can find, and what it cannot

A breath or stool test finds the bacterium. It does not look at the stomach, so it cannot tell you what the infection has already done.

Great at finding
  • A current infection, by breath test, stool antigen test or biopsy
  • Whether treatment worked, with the same tests, at least four weeks after the last dose
  • Inflammation in the lining, when the test is a biopsy read by a pathologist
Not the best tool for
  • Ulcers or stomach cancer: a breath or stool test cannot see them. A gastroscopy looks at the lining directly.
  • Precancerous change, such as atrophy or intestinal metaplasia: only a gastroscopy with biopsies shows it.
  • Cancer by blood test: no tumor marker replaces a gastroscopy. The tumor markers page explains why.
  • Hidden blood from the bowel: the H. pylori stool test is not the colorectal stool test (FIT). Both are on the urine and stool tests page.

Who should be tested, and who should not

The American College of Gastroenterology (ACG, US) lists who to test in its 2024 guideline. The 2018 Houston Consensus adds when testing stops helping:

When an H. pylori test fits, from ACG 2024 and Houston 2018 (US).
Your situation What the guidance says
A current or past peptic ulcer (stomach or duodenal ulcer) Test (ACG)
Indigestion (dyspepsia) under 60, with no alarm features Test (ACG). Alarm features are bleeding, vomiting, unexplained weight loss and iron deficiency.
Indigestion with alarm features Endoscopy with biopsies (ACG). See a doctor rather than booking a breath test.
Long-term NSAID painkillers, or starting daily aspirin Test (ACG)
A family history of stomach cancer Test (ACG)
An adult in your household has H. pylori Test (ACG)
Iron deficiency anemia with no clear cause, found on a blood count Test (ACG)
Born in a region where stomach cancer is common Listed by the ACG among high-risk groups
Treated, and a proper test has confirmed the cure No further testing (Houston: "we recommend against further H pylori testing")
You want to check a cure with a blood antibody test Not useful. Only breath, stool or biopsy tests confirm a cure.

Medicines that can cause a false negative

Some medicines lower the number of bacteria in the stomach without clearing them. A test taken then can read negative while the infection is still there. The two US sources give different hold times for acid reducers:

Hold times before a test for active infection, as each source words them.
Medicine ACG 2024 (before a test of cure) Houston Consensus 2018
Proton pump inhibitors (PPIs), acid reducers such as omeprazole Hold 2 weeks Discontinued at least 4 weeks before a breath or stool test
Antibiotics and bismuth Hold 4 weeks Stopped at least 4 weeks before testing
H2 blockers and antacids Not addressed in the highlights May be used without affecting breath or stool test accuracy

H. pylori testing in Taiwan

Taiwan's Health Promotion Administration (HPA) offers a one-time H. pylori stool antigen test at ages 45–74, nationwide from 2026-01-01. Taiwan has no population gastroscopy program. Finding and treating the infection is its stomach-cancer strategy instead. Researchers at National Taiwan University Hospital put the infection rate at about 22% in that age group.

New Dawn Health books an H. pylori test in the ways below. Live prices are further down this page:

  • A urea breath test on its own. The H Pylori Breath Test is offered at iHope Clinic in Taipei.
  • A biopsy during a gastroscopy. The H. pylori Biopsy is an add-on to the Digestive: Upper Endoscopy & Colonoscopy package only. Its listing names a rapid urease test, histology or culture as the lab method.
  • A stool antigen test. Whether a partner clinic offers one is something your coordinator confirms.

What happens on the day?

MedlinePlus, the US National Library of Medicine's health site, describes the breath test in these steps:

  1. 1
    Before you book
    List every acid reducer, antibiotic and bismuth product from the last month. Ask the doctor who prescribed it whether to pause it before the test.
  2. 2
    Before the test
    Whether you need to fast, and for how long, is confirmed by your coordinator when you book.
  3. 3
    First breath sample
    You breathe into a container. This sample is the baseline.
  4. 4
    Swallow the urea
    You swallow urea that contains a marked form of carbon. H. pylori breaks urea down and releases that carbon as carbon dioxide.
  5. 5
    Second breath sample
    A few minutes later you breathe into a second container. More marked carbon than at baseline suggests an infection.

A biopsy is taken during the gastroscopy itself, usually under sedation. Preparation, fasting and sedation are on the gastroscopy and colonoscopy page; your coordinator confirms them for your clinic.

What are the risks?

MedlinePlus lists no known risks for the breath or stool test. The risks of the other routes, and of the result itself:

  • Biopsy during a gastroscopy. Throat discomfort, a small chance of bleeding at the biopsy site that usually stops on its own, and a very small chance of a tear.
  • Sedation for the gastroscopy. You need someone to take you home. The gastroscopy page covers it.
  • A false negative. Recent acid reducers, antibiotics or bismuth can hide an infection.
  • A misleading blood test. A positive antibody result can reflect an infection that is long gone.

Results & follow-up after you fly home

When the report arrives, and in which language, is confirmed when you book. What follows depends on the result:

  1. 1
    If the result is negative
    You probably do not have the infection. If you were taking a PPI before the test, ask a doctor whether to repeat it later.
  2. 2
    If the result is positive
    Take the report to a doctor, in Taiwan or at home. Treatment is a course of antibiotics with an acid reducer, prescribed by that doctor.
  3. 3
    Finish the full course
    The ACG 2024 guideline prefers a 14-day regimen when it is unknown which antibiotics the bacteria resist.
  4. 4
    Test again to confirm the cure
    The ACG advises a breath, stool or biopsy test at least four weeks after treatment. Houston notes current treatments fail in at least 20% of cases.
  5. 5
    Stop once the cure is confirmed
    Houston recommends against further testing after that. Adults in your household may be tested too.
  6. 6
    Act on symptoms, whatever the result
    Black stools or vomiting blood still means an emergency call. In Taiwan call 119 (the local equivalent of 911).

Cost and coverage

The live prices further down this page are New Dawn Health's booking prices. What each one covers differs:

  • The breath test is booked on its own. Whether a doctor's consultation is included is confirmed when you book.
  • The biopsy add-on needs the endoscopy package. The endoscopy package's listing says biopsies the doctor decides to take during the scan are billed separately at the clinic.
  • Treatment is separate from the test. Whether medicines can be prescribed at your visit is confirmed when you book.
  • Short-term visitors are not covered by Taiwan's National Health Insurance, so screening is self-funded.
  • Reimbursement at home is a question for your insurer. Ask before you book whether your plan pays for a test done abroad.

Sources & further reading

  1. [1] ACG Clinical Guideline: Treatment of Helicobacter pylori Infection (Chey 2024) — 14-day bismuth quadruple therapy preferred when susceptibility is unknown; who to test; universal test of cure — American College of Gastroenterology / American Journal of Gastroenterology — PubMed
  2. [2] ACG Guideline Highlights: Treatment of H. pylori Infection (2024) — when to test; all infected patients treated; test of cure at least four weeks after therapy by breath, fecal antigen or biopsy test; hold PPI 2 weeks, bismuth and antibiotics 4 weeks — American College of Gastroenterology
  3. [3] Houston Consensus Conference on Testing for Helicobacter pylori Infection in the United States (El-Serag 2018) — statements 20–28: serology not for active infection; 2 biopsies each from antrum and corpus; PPIs 4 weeks, bismuth and antibiotics 4 weeks; repeat a negative on PPIs; confirm eradication; therapies fail in at least 20% — Clinical Gastroenterology and Hepatology / PubMed Central
  4. [4] Helicobacter pylori (H. pylori) tests — breath, stool, blood and biopsy procedures; risks; urgent symptoms — MedlinePlus (NIH)
  5. [5] H. pylori and Cancer — lives in the stomach mucus; infection does not itself cause illness; chronic inflammation — National Cancer Institute
  6. [6] Tumor Markers — fact sheet (markers do not work well for screening) — National Cancer Institute
  7. [7] Mass eradication of Helicobacter pylori to reduce gastric cancer incidence and mortality: a long-term cohort study on Matsu Islands (Chiang 2021) — residents 30 and older, breath test, 2004–2018; incidence down 53%; mortality reduction not significant — Gut / PubMed Central
  8. [8] Taiwan national cancer screening programs — one-time H. pylori stool antigen test at 45–74 from 2026; no population gastroscopy program — Health Promotion Administration, Ministry of Health and Welfare (Taiwan)
  9. [9] Free "H pylori" tests offered to prevent stomach cancer (2026-01-28) — one-time stool antigen test for ages 45 to 74 from Jan. 1 — Taipei Times
  10. [10] 2-in-1 screening could cut gastric cancer deaths: NTUH (2026-07-17) — infection rate about 22 percent at ages 45 to 74 — Taipei Times

Conditions this exam is used for

H. pylori test (stool antigen, breath test, biopsy) — Frequently Asked Questions

Is a breath test or a blood test better for H. pylori?

A breath test. It detects a current infection. A blood antibody test cannot tell a past infection from a current one, and the Houston Consensus recommends against using it for active infection. A stool antigen test or a biopsy also detects a current infection.

Do I need to stop my acid reflux medicine before the test?

Ask the doctor who prescribed it; do not stop it on your own. PPIs can cause a false negative. The ACG (2024) advises holding them for two weeks before a test of cure, and the Houston Consensus (2018) for four.

Can an H. pylori test find stomach cancer?

No. It finds the bacterium, not cancer or ulcers. A gastroscopy looks at the stomach lining, and biopsies show precancerous change. Tumor marker blood tests do not replace it.

I tested positive. What happens next?

A doctor prescribes a course of antibiotics with an acid reducer. The ACG then advises a breath, stool or biopsy test at least four weeks after treatment, because treatment does not always work. Once a cure is confirmed, no further testing is needed.

Does Taiwan offer free H. pylori testing?

Taiwan's Health Promotion Administration offers a one-time stool antigen test at ages 45–74 from 2026. Short-term visitors are not covered by Taiwan's National Health Insurance, so screening is self-funded. Taiwan has no population gastroscopy program.

H. pylori test (stool antigen, breath test, biopsy) at New Dawn Health

Current bookable prices from our catalogue.

Book it on its own

  • H Pylori Breath Test $75 USD Book →
  • Possible add-on — availability depends on the selected package and partner clinic and is confirmed during booking $25 USD

Screen smart. Travel once. Know where you stand.

Compare screening packages, see exactly what each one includes, or talk to a coordinator about fitting H. pylori test (stool antigen, breath test, biopsy) into your visit to Taiwan.